| 1 |
greg |
2.1 |
/*
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==================================================================
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N-way hybrid out-of-core merge sort
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Sorts N blocks internally using quicksort, followed by N-way
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merge using priority queue.
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| 7 |
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Roland Schregle (roland.schregle@{hslu.ch, gmail.com})
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(c) Fraunhofer Institute for Solar Energy Systems,
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Lucerne University of Applied Sciences & Arts
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==================================================================
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$Id $
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*/
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#include "oocsort.h"
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#include <stdio.h>
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#include <stdlib.h>
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| 19 |
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#include <string.h>
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| 20 |
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/* Priority queue node */
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typedef struct {
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OOC_Sort_Key pri; /* Record's priority (sort key) */
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unsigned blk; /* Block containing record */
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} OOC_Sort_PQNode;
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| 28 |
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typedef struct {
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OOC_Sort_PQNode *node;
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unsigned len, tail;
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} OOC_Sort_PQueue;
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/* Block descriptor */
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typedef struct {
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FILE *file; /* Temporary file */
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char *buf, *head, *tail; /* Associated I/O buffa,
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head/tail pointers */
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} OOC_Sort_Block;
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/* Record priority evaluation function */
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static OOC_Sort_Key (*pri)(const void *);
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static int OOC_Sort_Compare (const void *rec1, const void *rec2)
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/* Comparison function for internal sorting */
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{
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const OOC_Sort_Key pri1 = pri(rec1), pri2 = pri(rec2);
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if (!rec1 || !rec2)
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return 0;
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if (pri1 < pri2)
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return -1;
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else if (pri1 > pri2)
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return 1;
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else
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return 0;
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}
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static char *OOC_Sort_Read (OOC_Sort_Block *blk, unsigned recSize)
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/* Read next record from specified block; return pointer to buffa entry
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or NULL on error */
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{
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char *rec = NULL;
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if (blk -> head >= blk -> tail) {
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/* Input buffa empty; read next block (potentially truncated if last),
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* where tail marks end of buffa */
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const unsigned long bufSize = blk -> tail - blk -> buf;
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if (feof(blk -> file))
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return NULL;
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blk -> head = blk -> buf;
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blk -> tail = blk -> buf + fread(blk -> buf, 1, bufSize, blk -> file);
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| 79 |
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if (blk -> tail == blk -> head)
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return NULL;
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}
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rec = blk -> head;
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blk -> head += recSize;
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return rec;
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}
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static char *OOC_Sort_Peek (OOC_Sort_Block *blk, unsigned recSize)
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/* Return next record from specified block WITHOUT removing from buffa */
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{
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char *rec = NULL;
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| 95 |
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if (rec = OOC_Sort_Read(blk, recSize)) {
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/* Restore buffa head */
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blk -> head -= recSize;
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}
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return rec;
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}
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static char *OOC_Sort_Write (OOC_Sort_Block *blk, unsigned recSize,
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const char *rec)
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/* Output record to specified block and return pointer to buffa entry
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or NULL on error */
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{
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char *res = NULL;
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if (blk -> head >= blk -> tail) {
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/* Flush output buffa (tail marks end of buffa) */
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const unsigned long bufSize = blk -> tail - blk -> buf;
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blk -> head = blk -> buf;
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if (fwrite(blk -> buf, 1, bufSize, blk -> file) != bufSize)
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return NULL;
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}
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| 120 |
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if (!rec)
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return NULL;
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memcpy(blk -> head, rec, recSize);
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res = blk -> head;
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blk -> head += recSize;
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return res;
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}
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| 131 |
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#ifdef DEBUG
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static int OOC_Sort_PQCheck (OOC_Sort_PQueue *pq, unsigned root)
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/* Priority queue sanity check */
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{
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unsigned kid;
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if (root < pq -> tail) {
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if ((kid = (root << 1) + 1) < pq -> tail)
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if (pq -> node [kid].pri < pq -> node [root].pri)
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return -1;
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else return OOC_Sort_PQCheck(pq, kid);
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| 142 |
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| 143 |
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if ((kid = kid + 1) < pq -> tail)
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| 144 |
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if (pq -> node [kid].pri < pq -> node [root].pri)
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return -1;
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else return OOC_Sort_PQCheck(pq, kid);
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| 147 |
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| 148 |
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}
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| 149 |
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| 150 |
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return 0;
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| 151 |
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}
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| 152 |
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#endif
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| 153 |
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| 154 |
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| 155 |
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static int OOC_Sort_Push (OOC_Sort_PQueue *pq, OOC_Sort_Key pri,
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| 156 |
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unsigned blk)
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| 157 |
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/* Insert specified block index into priority queue; return block index
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| 158 |
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* or -1 if queue is full */
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| 159 |
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{
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| 160 |
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OOC_Sort_PQNode *pqn = pq -> node;
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| 161 |
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unsigned kid, root;
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| 162 |
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| 163 |
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if (pq -> tail >= pq -> len)
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| 164 |
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/* Queue full */
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| 165 |
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return -1;
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| 166 |
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| 167 |
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/* Append node at tail and re-sort */
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| 168 |
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kid = pq -> tail++;
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| 170 |
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while (kid) {
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| 171 |
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root = kid - 1 >> 1;
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| 172 |
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| 173 |
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/* Compare with parent node and swap if necessary, else terminate */
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| 174 |
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if (pri < pqn [root].pri) {
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| 175 |
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pqn [kid].pri = pqn [root].pri;
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| 176 |
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pqn [kid].blk = pqn [root].blk;
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| 177 |
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kid = root;
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| 178 |
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}
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| 179 |
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else break;
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| 180 |
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}
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| 181 |
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| 182 |
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pqn [kid].pri = pri;
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| 183 |
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pqn [kid].blk = blk;
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| 184 |
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| 185 |
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#ifdef DEBUG
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| 186 |
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if (OOC_Sort_PQCheck(pq, 0) < 0) {
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| 187 |
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fprintf(stderr, "OOC_Sort: priority queue inconsistency\n");
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| 188 |
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return -1;
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| 189 |
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}
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| 190 |
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#endif
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| 191 |
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| 192 |
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return blk;
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| 193 |
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}
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| 194 |
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| 195 |
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| 196 |
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static int OOC_Sort_Pop (OOC_Sort_PQueue *pq)
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| 197 |
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/* Remove head of priority queue and return its block index
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| 198 |
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* or -1 if queue is empty */
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| 199 |
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{
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| 200 |
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OOC_Sort_PQNode *pqn = pq -> node;
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| 201 |
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OOC_Sort_Key pri;
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| 202 |
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unsigned kid, kid2, root = 0, blk, res;
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| 203 |
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| 204 |
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if (!pq -> tail)
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| 205 |
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/* Queue empty */
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| 206 |
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return -1;
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| 207 |
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| 208 |
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res = pqn -> blk;
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| 209 |
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pri = pqn [--pq -> tail].pri;
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| 210 |
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blk = pqn [pq -> tail].blk;
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| 211 |
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| 212 |
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/* Replace head with tail node and re-sort */
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| 213 |
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while ((kid = (root << 1) + 1) < pq -> tail) {
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| 214 |
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/* Compare with with smaller kid and swap if necessary, else
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| 215 |
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* terminate */
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| 216 |
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if ((kid2 = (kid + 1)) < pq -> tail && pqn [kid2].pri < pqn [kid].pri)
|
| 217 |
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kid = kid2;
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| 218 |
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|
| 219 |
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if (pri > pqn [kid].pri) {
|
| 220 |
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pqn [root].pri = pqn [kid].pri;
|
| 221 |
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pqn [root].blk = pqn [kid].blk;
|
| 222 |
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}
|
| 223 |
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else break;
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| 224 |
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| 225 |
|
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root = kid;
|
| 226 |
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}
|
| 227 |
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|
| 228 |
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pqn [root].pri = pri;
|
| 229 |
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pqn [root].blk = blk;
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| 230 |
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| 231 |
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#ifdef DEBUG
|
| 232 |
|
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if (OOC_Sort_PQCheck(pq, 0) < 0) {
|
| 233 |
|
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fprintf(stderr, "OOC_Sort: priority queue inconsistency\n");
|
| 234 |
|
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return -1;
|
| 235 |
|
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}
|
| 236 |
|
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#endif
|
| 237 |
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|
| 238 |
|
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return res;
|
| 239 |
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}
|
| 240 |
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| 241 |
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#if 0
|
| 242 |
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int OOC_Sort (const char *inFile, const char *outFile,
|
| 243 |
|
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unsigned long blkSize, unsigned recSize,
|
| 244 |
|
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OOC_Sort_Key (*priority)(const void *))
|
| 245 |
|
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/* Sort records in inFile and output to outFile by (a) internally
|
| 246 |
|
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* quicksorting block of blkSize bytes at a time, then (b) merging them
|
| 247 |
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* via a priority queue. RecSize specifies the size in bytes of each data
|
| 248 |
|
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* record. The priority() callback evaluates a record's priority and must be
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| 249 |
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* supplied by the caller. */
|
| 250 |
|
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{
|
| 251 |
|
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FILE *in = NULL;
|
| 252 |
|
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OOC_Sort_PQueue pqueue; /* Priority queue */
|
| 253 |
|
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OOC_Sort_Block *iBlk = NULL, oBlk; /* Block descriptors */
|
| 254 |
|
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char *rec, *sortBuf = NULL; /* Internal sort buffa */
|
| 255 |
|
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unsigned bufSize, numBlk;
|
| 256 |
|
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int b;
|
| 257 |
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|
| 258 |
|
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/* Set record priority evaluation callback */
|
| 259 |
|
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pri = priority;
|
| 260 |
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|
| 261 |
|
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/* Round block and buffa size down to nearest multiple of record size */
|
| 262 |
|
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blkSize = (blkSize / recSize) * recSize;
|
| 263 |
|
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bufSize = (OOC_SORT_BUFSIZE / recSize) * recSize;
|
| 264 |
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|
| 265 |
|
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if (!(in = fopen(inFile, "rb"))) {
|
| 266 |
|
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fprintf(stderr, "OOC_Sort: failure opening input file %s\n", inFile);
|
| 267 |
|
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return -1;
|
| 268 |
|
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}
|
| 269 |
|
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|
| 270 |
|
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/* Get input file size and number of blocks (rounded up to nearest
|
| 271 |
|
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* multiple of block size) */
|
| 272 |
|
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fseek(in, 0, SEEK_END);
|
| 273 |
|
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numBlk = (ftell(in) + blkSize - 1) / blkSize;
|
| 274 |
|
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rewind(in);
|
| 275 |
|
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#else
|
| 276 |
|
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|
| 277 |
|
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int OOC_Sort (const char *inFile, const char *outFile,
|
| 278 |
|
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unsigned numBlk, unsigned recSize,
|
| 279 |
|
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OOC_Sort_Key (*priority)(const void *))
|
| 280 |
|
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/* Sort records in inFile and output to outFile by (a) internally
|
| 281 |
|
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* quicksorting numBlk blocks at a time, then (b) merging them via a priority
|
| 282 |
|
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* queue. RecSize specifies the size in bytes of each data record. The
|
| 283 |
|
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* priority() callback evaluates a record's priority (ordinal index) and
|
| 284 |
|
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* must be supplied by the caller. */
|
| 285 |
|
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{
|
| 286 |
|
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FILE *in = NULL;
|
| 287 |
|
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OOC_Sort_PQueue pqueue; /* Priority queue */
|
| 288 |
|
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OOC_Sort_Block *iBlk = NULL, oBlk; /* Block descriptors */
|
| 289 |
|
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char *rec, *sortBuf = NULL; /* Internal sort buffa */
|
| 290 |
|
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unsigned long blkSize;
|
| 291 |
|
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unsigned bufSize;
|
| 292 |
|
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int b;
|
| 293 |
|
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|
| 294 |
|
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/* Set record priority evaluation callback */
|
| 295 |
|
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pri = priority;
|
| 296 |
|
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|
| 297 |
|
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/* Round buffa size down to nearest multiple of record size */
|
| 298 |
|
|
bufSize = (OOC_SORT_BUFSIZE / recSize) * recSize;
|
| 299 |
|
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|
| 300 |
|
|
if (!(in = fopen(inFile, "rb"))) {
|
| 301 |
|
|
fprintf(stderr, "OOC_Sort: failure opening input file %s\n", inFile);
|
| 302 |
|
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return -1;
|
| 303 |
|
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}
|
| 304 |
|
|
|
| 305 |
|
|
/* Get input file size and block size (in number of records) rounded up
|
| 306 |
|
|
* to nearest multiple of number of blocks */
|
| 307 |
|
|
fseek(in, 0, SEEK_END);
|
| 308 |
|
|
blkSize = (ftell(in) / recSize + numBlk - 1) / numBlk;
|
| 309 |
|
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rewind(in);
|
| 310 |
|
|
#endif
|
| 311 |
|
|
|
| 312 |
|
|
/* Allocate buffa for internal sorting */
|
| 313 |
|
|
if (!(sortBuf = malloc(blkSize))) {
|
| 314 |
|
|
fprintf(stderr, "OOC_Sort: failure allocating internal sort buffer\n");
|
| 315 |
|
|
return -1;
|
| 316 |
|
|
}
|
| 317 |
|
|
|
| 318 |
|
|
/* Allocate input blocks */
|
| 319 |
|
|
if (!(iBlk = calloc(numBlk, sizeof(OOC_Sort_Block)))) {
|
| 320 |
|
|
fprintf(stderr, "OOC_Sort: failure allocating input blocks\n");
|
| 321 |
|
|
return -1;
|
| 322 |
|
|
}
|
| 323 |
|
|
|
| 324 |
|
|
/* ===================================================================
|
| 325 |
|
|
* Pass 1: Internal quicksort of each input block in sortBuf
|
| 326 |
|
|
* =================================================================== */
|
| 327 |
|
|
|
| 328 |
|
|
for (b = 0; b < numBlk; b++) {
|
| 329 |
|
|
unsigned long numRec;
|
| 330 |
|
|
|
| 331 |
|
|
/* Open temporary file associated with block */
|
| 332 |
|
|
if (!(iBlk [b].file = tmpfile())) {
|
| 333 |
|
|
/* fprintf(stderr, "OOC_Sort: failure opening block file\n"); */
|
| 334 |
|
|
perror("OOC_Sort: failure opening block file");
|
| 335 |
|
|
return -1;
|
| 336 |
|
|
}
|
| 337 |
|
|
|
| 338 |
|
|
if (feof(in)) {
|
| 339 |
|
|
fprintf(stderr, "OOC_Sort: unexpected end of input file %s\n",
|
| 340 |
|
|
inFile);
|
| 341 |
|
|
return -1;
|
| 342 |
|
|
}
|
| 343 |
|
|
|
| 344 |
|
|
/* Read next block (potentially truncated if last) */
|
| 345 |
|
|
if (!(numRec = fread(sortBuf, 1, blkSize, in) / recSize)) {
|
| 346 |
|
|
fprintf(stderr, "OOC_Sort: error reading from input file %s\n",
|
| 347 |
|
|
inFile);
|
| 348 |
|
|
return -1;
|
| 349 |
|
|
}
|
| 350 |
|
|
|
| 351 |
|
|
/* Quicksort block internally and write out to temp file */
|
| 352 |
|
|
qsort(sortBuf, numRec, recSize, OOC_Sort_Compare);
|
| 353 |
|
|
|
| 354 |
|
|
if (fwrite(sortBuf, recSize, numRec, iBlk [b].file) != numRec) {
|
| 355 |
|
|
fprintf(stderr, "OOC_Sort: error writing to block file\n");
|
| 356 |
|
|
return -1;
|
| 357 |
|
|
}
|
| 358 |
|
|
|
| 359 |
|
|
rewind(iBlk [b].file);
|
| 360 |
|
|
}
|
| 361 |
|
|
|
| 362 |
|
|
/* Close input file and free sort buffa */
|
| 363 |
|
|
fclose(in);
|
| 364 |
|
|
free(sortBuf);
|
| 365 |
|
|
|
| 366 |
|
|
/* Allocate priority queue with numBlk nodes */
|
| 367 |
|
|
pqueue.tail = 0;
|
| 368 |
|
|
pqueue.len = numBlk;
|
| 369 |
|
|
if (!(pqueue.node = calloc(numBlk, sizeof(OOC_Sort_PQNode)))) {
|
| 370 |
|
|
fprintf(stderr, "OOC_Sort: failure allocating priority queue\n");
|
| 371 |
|
|
return -1;
|
| 372 |
|
|
}
|
| 373 |
|
|
|
| 374 |
|
|
/* Prepare for pass 2: allocate buffa for each input block and initialise
|
| 375 |
|
|
* fill priority queue with single record from each block */
|
| 376 |
|
|
for (b = 0; b < numBlk; b++) {
|
| 377 |
|
|
if (!(iBlk [b].buf = malloc(bufSize))) {
|
| 378 |
|
|
fprintf(stderr, "OOC_Sort: failure allocating input buffer\n");
|
| 379 |
|
|
return -1;
|
| 380 |
|
|
}
|
| 381 |
|
|
|
| 382 |
|
|
/* Peek first record in block file without modifying buffa */
|
| 383 |
|
|
iBlk [b].head = iBlk [b].tail = iBlk [b].buf + bufSize;
|
| 384 |
|
|
if (!(rec = OOC_Sort_Peek(iBlk + b, recSize))) {
|
| 385 |
|
|
fprintf(stderr, "OOC_Sort: error reading from block file\n");
|
| 386 |
|
|
return -1;
|
| 387 |
|
|
}
|
| 388 |
|
|
|
| 389 |
|
|
/* Insert record into priority queue */
|
| 390 |
|
|
if (OOC_Sort_Push(&pqueue, priority(rec), b) < 0) {
|
| 391 |
|
|
fprintf(stderr, "OOC_Sort: failed priority queue insertion\n");
|
| 392 |
|
|
return -1;
|
| 393 |
|
|
}
|
| 394 |
|
|
}
|
| 395 |
|
|
|
| 396 |
|
|
/* Allocate output buffa and open output file */
|
| 397 |
|
|
if (!(oBlk.file = fopen(outFile, "wb"))) {
|
| 398 |
|
|
fprintf(stderr, "OOC_Sort: failure opening output file %s\n", outFile);
|
| 399 |
|
|
return -1;
|
| 400 |
|
|
}
|
| 401 |
|
|
|
| 402 |
|
|
if (!(oBlk.head = oBlk.buf = malloc(bufSize))) {
|
| 403 |
|
|
fprintf(stderr, "OOC_Sort: failure allocating output buffer\n");
|
| 404 |
|
|
return -1;
|
| 405 |
|
|
}
|
| 406 |
|
|
|
| 407 |
|
|
/* tail marks end of output buffa */
|
| 408 |
|
|
oBlk.tail = oBlk.buf + bufSize;
|
| 409 |
|
|
|
| 410 |
|
|
/* ===================================================================
|
| 411 |
|
|
* Pass 2: External merge of all blocks using priority queue
|
| 412 |
|
|
* =================================================================== */
|
| 413 |
|
|
|
| 414 |
|
|
do {
|
| 415 |
|
|
/* Get next node in priority queue, read next record in corresponding
|
| 416 |
|
|
* block, and send to output */
|
| 417 |
|
|
b = OOC_Sort_Pop(&pqueue);
|
| 418 |
|
|
|
| 419 |
|
|
if (b >= 0) {
|
| 420 |
|
|
/* Priority queue non-empty */
|
| 421 |
|
|
if (!(rec = OOC_Sort_Read(iBlk + b, recSize))) {
|
| 422 |
|
|
/* Corresponding record should still be in the buffa, so EOF
|
| 423 |
|
|
* should not happen */
|
| 424 |
|
|
fprintf(stderr, "OOC_Sort: unexpected EOF in block file\n");
|
| 425 |
|
|
return -1;
|
| 426 |
|
|
}
|
| 427 |
|
|
|
| 428 |
|
|
if (!OOC_Sort_Write(&oBlk, recSize, rec)) {
|
| 429 |
|
|
fprintf(stderr, "OOC_Sort; error writing to output file %s\n",
|
| 430 |
|
|
outFile);
|
| 431 |
|
|
return -1;
|
| 432 |
|
|
}
|
| 433 |
|
|
|
| 434 |
|
|
/* Peek next record from same block and insert in priority queue */
|
| 435 |
|
|
if (rec = OOC_Sort_Peek(iBlk + b, recSize))
|
| 436 |
|
|
/* Buffa not exhausted */
|
| 437 |
|
|
if (OOC_Sort_Push(&pqueue, priority(rec), b) < 0) {
|
| 438 |
|
|
fprintf(stderr, "OOC_Sort: failed priority queue insertion\n");
|
| 439 |
|
|
return -1;
|
| 440 |
|
|
}
|
| 441 |
|
|
}
|
| 442 |
|
|
} while (b >= 0);
|
| 443 |
|
|
|
| 444 |
|
|
/* Priority queue now empty; flush output buffa & close file */
|
| 445 |
|
|
oBlk.tail = oBlk.head;
|
| 446 |
|
|
OOC_Sort_Write(&oBlk, 0, NULL);
|
| 447 |
|
|
fclose(oBlk.file);
|
| 448 |
|
|
|
| 449 |
|
|
for (b = 0; b < numBlk; b++) {
|
| 450 |
|
|
fclose(iBlk [b].file);
|
| 451 |
|
|
free(iBlk [b].buf);
|
| 452 |
|
|
}
|
| 453 |
|
|
|
| 454 |
|
|
free(iBlk);
|
| 455 |
|
|
free(pqueue.node);
|
| 456 |
|
|
|
| 457 |
|
|
return 0;
|
| 458 |
|
|
} |