| 11 |
|
#include "platform.h" |
| 12 |
|
#include "rtio.h" |
| 13 |
|
#include "resolu.h" |
| 14 |
< |
#ifdef _WIN32 |
| 15 |
< |
#undef ftello |
| 16 |
< |
#define ftello ftell |
| 17 |
< |
#undef ssize_t |
| 18 |
< |
#define ssize_t size_t |
| 14 |
> |
#if defined(_WIN32) || defined(_WIN64) |
| 15 |
> |
#undef ftello |
| 16 |
> |
#define ftello ftell |
| 17 |
> |
#undef ssize_t |
| 18 |
> |
#define ssize_t size_t |
| 19 |
|
#else |
| 20 |
< |
#include <sys/mman.h> |
| 20 |
> |
#include <sys/mman.h> |
| 21 |
|
#endif |
| 22 |
|
|
| 23 |
– |
#ifdef getc_unlocked /* avoid horrendous overhead of flockfile */ |
| 24 |
– |
#undef getc |
| 25 |
– |
#undef putc |
| 26 |
– |
#define getc getc_unlocked |
| 27 |
– |
#define putc putc_unlocked |
| 28 |
– |
#endif |
| 29 |
– |
|
| 23 |
|
typedef struct { |
| 24 |
+ |
void *mapped; /* memory-mapped pointer */ |
| 25 |
|
void *base; /* pointer to base memory */ |
| 26 |
|
size_t len; /* allocated memory length */ |
| 33 |
– |
int mapped; /* memory-mapped file? */ |
| 27 |
|
} MEMLOAD; /* file loaded/mapped into memory */ |
| 28 |
|
|
| 29 |
|
typedef struct { |
| 42 |
|
return; |
| 43 |
|
#ifdef MAP_FILE |
| 44 |
|
if (mp->mapped) |
| 45 |
< |
munmap(mp->base, mp->len); |
| 45 |
> |
munmap(mp->mapped, mp->len); |
| 46 |
|
else |
| 47 |
|
#endif |
| 48 |
|
free(mp->base); |
| 49 |
+ |
mp->mapped = NULL; |
| 50 |
|
mp->base = NULL; |
| 51 |
|
mp->len = 0; |
| 52 |
|
} |
| 53 |
|
|
| 60 |
– |
/* load a file into memory */ |
| 61 |
– |
static int |
| 62 |
– |
load_file(MEMLOAD *mp, FILE *fp) |
| 63 |
– |
{ |
| 64 |
– |
int fd; |
| 65 |
– |
off_t skip, flen; |
| 66 |
– |
|
| 67 |
– |
if (mp == NULL) |
| 68 |
– |
return(-1); |
| 69 |
– |
mp->base = NULL; |
| 70 |
– |
mp->len = 0; |
| 71 |
– |
mp->mapped = 0; |
| 72 |
– |
if (fp == NULL) |
| 73 |
– |
return(-1); |
| 74 |
– |
fd = fileno(fp); |
| 75 |
– |
skip = ftello(fp); |
| 76 |
– |
flen = lseek(fd, 0, SEEK_END); |
| 77 |
– |
if (flen <= skip) |
| 78 |
– |
return((int)(flen - skip)); |
| 79 |
– |
mp->len = (size_t)(flen - skip); |
| 80 |
– |
#ifdef MAP_FILE |
| 81 |
– |
if (mp->len > 1L<<20) { /* map file if > 1 MByte */ |
| 82 |
– |
mp->base = mmap(NULL, mp->len, PROT_READ, MAP_PRIVATE, fd, skip); |
| 83 |
– |
if (mp->base != MAP_FAILED) { |
| 84 |
– |
mp->mapped = 1; |
| 85 |
– |
return(1); /* mmap() success */ |
| 86 |
– |
} |
| 87 |
– |
mp->base = NULL; /* fall back to reading it in... */ |
| 88 |
– |
} |
| 89 |
– |
#endif |
| 90 |
– |
if (lseek(fd, skip, SEEK_SET) != skip || |
| 91 |
– |
(mp->base = malloc(mp->len)) == NULL) { |
| 92 |
– |
mp->len = 0; |
| 93 |
– |
return(-1); |
| 94 |
– |
} |
| 95 |
– |
if (read(fd, (char *)mp->base, mp->len) != mp->len) { |
| 96 |
– |
free_load(mp); |
| 97 |
– |
return(-1); |
| 98 |
– |
} |
| 99 |
– |
return(1); |
| 100 |
– |
} |
| 101 |
– |
|
| 54 |
|
/* load memory from an input stream, starting from current position */ |
| 55 |
|
static int |
| 56 |
|
load_stream(MEMLOAD *mp, FILE *fp) |
| 61 |
|
|
| 62 |
|
if (mp == NULL) |
| 63 |
|
return(-1); |
| 64 |
+ |
mp->mapped = NULL; |
| 65 |
|
mp->base = NULL; |
| 66 |
|
mp->len = 0; |
| 114 |
– |
mp->mapped = 0; |
| 67 |
|
if (fp == NULL) |
| 68 |
|
return(-1); |
| 69 |
|
while ((nr = fread(buf, 1, sizeof(buf), fp)) > 0) { |
| 70 |
|
if (!alloced) |
| 71 |
< |
mp->base = malloc(nr); |
| 71 |
> |
mp->base = malloc(alloced = nr); |
| 72 |
|
else if (mp->len+nr > alloced) |
| 73 |
|
mp->base = realloc(mp->base, |
| 74 |
|
alloced = alloced*(2+(nr==sizeof(buf)))/2+nr); |
| 86 |
|
return(mp->len > 0); |
| 87 |
|
} |
| 88 |
|
|
| 89 |
+ |
/* load a file into memory */ |
| 90 |
+ |
static int |
| 91 |
+ |
load_file(MEMLOAD *mp, FILE *fp) |
| 92 |
+ |
{ |
| 93 |
+ |
int fd; |
| 94 |
+ |
off_t skip, flen, fpos; |
| 95 |
+ |
|
| 96 |
+ |
#if defined(_WIN32) || defined(_WIN64) |
| 97 |
+ |
/* too difficult to fix this */ |
| 98 |
+ |
return load_stream(mp, fp); |
| 99 |
+ |
#endif |
| 100 |
+ |
if (mp == NULL) |
| 101 |
+ |
return(-1); |
| 102 |
+ |
mp->mapped = NULL; |
| 103 |
+ |
mp->base = NULL; |
| 104 |
+ |
mp->len = 0; |
| 105 |
+ |
if (fp == NULL) |
| 106 |
+ |
return(-1); |
| 107 |
+ |
fd = fileno(fp); |
| 108 |
+ |
skip = ftello(fp); |
| 109 |
+ |
flen = lseek(fd, 0, SEEK_END); |
| 110 |
+ |
if (flen <= skip) |
| 111 |
+ |
return((int)(flen - skip)); |
| 112 |
+ |
mp->len = (size_t)(flen - skip); |
| 113 |
+ |
#ifdef MAP_FILE |
| 114 |
+ |
if (mp->len > 1L<<20) { /* map file if > 1 MByte */ |
| 115 |
+ |
mp->mapped = mmap(NULL, flen, PROT_READ, MAP_PRIVATE, fd, 0); |
| 116 |
+ |
if (mp->mapped != MAP_FAILED) { |
| 117 |
+ |
mp->base = (char *)mp->mapped + skip; |
| 118 |
+ |
return(1); /* mmap() success */ |
| 119 |
+ |
} |
| 120 |
+ |
mp->mapped = NULL; /* else fall back to reading it in... */ |
| 121 |
+ |
} |
| 122 |
+ |
#endif |
| 123 |
+ |
if (lseek(fd, skip, SEEK_SET) != skip || |
| 124 |
+ |
(mp->base = malloc(mp->len)) == NULL) { |
| 125 |
+ |
mp->len = 0; |
| 126 |
+ |
return(-1); |
| 127 |
+ |
} |
| 128 |
+ |
fpos = skip; |
| 129 |
+ |
while (fpos < flen) { /* read() fails if n > 2 GBytes */ |
| 130 |
+ |
ssize_t nread = read(fd, (char *)mp->base+(fpos-skip), |
| 131 |
+ |
(flen-fpos < 1L<<24) ? flen-fpos : 1L<<24); |
| 132 |
+ |
if (nread <= 0) { |
| 133 |
+ |
free_load(mp); |
| 134 |
+ |
return(-1); |
| 135 |
+ |
} |
| 136 |
+ |
fpos += nread; |
| 137 |
+ |
} |
| 138 |
+ |
return(1); |
| 139 |
+ |
} |
| 140 |
+ |
|
| 141 |
|
/* free a record index */ |
| 142 |
|
#define free_records(rp) free(rp) |
| 143 |
|
|
| 145 |
|
static RECINDEX * |
| 146 |
|
index_records(const MEMLOAD *mp, int nw_rec) |
| 147 |
|
{ |
| 148 |
+ |
int nall = 0; |
| 149 |
|
RECINDEX *rp; |
| 150 |
|
char *cp, *mend; |
| 151 |
|
int n; |
| 154 |
|
return(NULL); |
| 155 |
|
if (nw_rec <= 0) |
| 156 |
|
return(NULL); |
| 157 |
< |
rp = (RECINDEX *)malloc(sizeof(RECINDEX) + mp->len/(2*nw_rec)*sizeof(char *)); |
| 157 |
> |
nall = 1000; |
| 158 |
> |
rp = (RECINDEX *)malloc(sizeof(RECINDEX) + nall*sizeof(char *)); |
| 159 |
|
if (rp == NULL) |
| 160 |
|
return(NULL); |
| 161 |
|
rp->nw_rec = nw_rec; |
| 167 |
|
++cp; |
| 168 |
|
if (cp >= mend) |
| 169 |
|
break; |
| 170 |
+ |
if (rp->nrecs >= nall) { |
| 171 |
+ |
nall += nall>>1; /* get more record space */ |
| 172 |
+ |
rp = (RECINDEX *)realloc(rp, |
| 173 |
+ |
sizeof(RECINDEX) + nall*sizeof(char *)); |
| 174 |
+ |
if (rp == NULL) |
| 175 |
+ |
return(NULL); |
| 176 |
+ |
} |
| 177 |
|
rp->rec[rp->nrecs++] = cp; /* point to first non-white */ |
| 178 |
|
n = rp->nw_rec; |
| 179 |
|
while (++cp < mend) /* find end of record */ |
| 287 |
|
int ni_rows = 0; /* number of input rows */ |
| 288 |
|
int no_columns = 0; /* number of output columns */ |
| 289 |
|
int no_rows = 0; /* number of output rows */ |
| 290 |
+ |
int transpose = 0; /* transpose rows & cols? */ |
| 291 |
+ |
int i_header = 1; /* input header? */ |
| 292 |
+ |
int o_header = 1; /* output header? */ |
| 293 |
|
|
| 294 |
|
/* check settings and assign defaults */ |
| 295 |
|
static int |
| 304 |
|
comp_size = sizeof(double); |
| 305 |
|
else if (!strcmp(fmtid, "byte")) |
| 306 |
|
comp_size = 1; |
| 307 |
< |
else { |
| 307 |
> |
else if (strcmp(fmtid, "ascii")) { |
| 308 |
|
fprintf(stderr, "Unsupported format: %s\n", fmtid); |
| 309 |
|
return(0); |
| 310 |
|
} |
| 311 |
|
} |
| 312 |
+ |
if (transpose && (no_rows <= 0) & (no_columns <= 0)) { |
| 313 |
+ |
if (ni_rows > 0) no_columns = ni_rows; |
| 314 |
+ |
if (ni_columns > 0) no_rows = ni_columns; |
| 315 |
+ |
} else if ((no_rows <= 0) & (no_columns > 0) && |
| 316 |
+ |
!((ni_rows*ni_columns) % no_columns)) |
| 317 |
+ |
no_rows = ni_rows*ni_columns/no_columns; |
| 318 |
|
if (n_comp <= 0) |
| 319 |
|
n_comp = 3; |
| 320 |
|
return(1); |
| 369 |
|
print_record(rp, j*ni_columns + i); |
| 370 |
|
putc(tabEOL[j >= no_columns-1], stdout); |
| 371 |
|
} else { /* binary output */ |
| 372 |
< |
fwrite((char *)mp->base + |
| 373 |
< |
(n_comp*comp_size)*(j*ni_columns + i), |
| 374 |
< |
n_comp*comp_size, 1, stdout); |
| 372 |
> |
putbinary((char *)mp->base + |
| 373 |
> |
(size_t)(n_comp*comp_size)*(j*ni_columns + i), |
| 374 |
> |
comp_size, n_comp, stdout); |
| 375 |
|
} |
| 376 |
|
if (ferror(stdout)) { |
| 377 |
|
fprintf(stderr, "Error writing to stdout\n"); |
| 394 |
|
int columns2go = no_columns; |
| 395 |
|
char word[256]; |
| 396 |
|
/* sanity checks */ |
| 397 |
< |
if (comp_size) |
| 398 |
< |
return(output_stream(fp)); /* binary data -- just copy */ |
| 397 |
> |
if (comp_size || (no_columns == ni_columns) & (no_rows == ni_rows)) |
| 398 |
> |
return(output_stream(fp)); /* no-op -- just copy */ |
| 399 |
|
if (no_columns <= 0) { |
| 400 |
|
fprintf(stderr, "Missing -oc specification\n"); |
| 401 |
|
return(0); |
| 448 |
|
static int |
| 449 |
|
headline(char *s, void *p) |
| 450 |
|
{ |
| 451 |
< |
static char fmt[32]; |
| 451 |
> |
static char fmt[MAXFMTLEN]; |
| 452 |
|
int n; |
| 453 |
|
|
| 454 |
|
if (formatval(fmt, s)) { |
| 482 |
|
if (!strncmp(s, "NCOMP=", 6)) { |
| 483 |
|
n = atoi(s+6); |
| 484 |
|
if ((n_comp > 0) & (n != n_comp)) { |
| 485 |
< |
fputs("Incorrect number of components", stderr); |
| 485 |
> |
fputs("Incorrect number of components\n", stderr); |
| 486 |
|
return(-1); |
| 487 |
|
} |
| 488 |
|
n_comp = n; |
| 489 |
|
return(0); |
| 490 |
|
} |
| 491 |
< |
fputs(s, stdout); /* copy header info. */ |
| 491 |
> |
if (o_header) |
| 492 |
> |
fputs(s, stdout); /* copy header info. */ |
| 493 |
|
return(0); |
| 494 |
|
} |
| 495 |
|
|
| 497 |
|
int |
| 498 |
|
main(int argc, char *argv[]) |
| 499 |
|
{ |
| 500 |
< |
int i_header = 1; /* input header? */ |
| 478 |
< |
int o_header = 1; /* output header? */ |
| 479 |
< |
int transpose = 0; /* transpose rows & cols? */ |
| 480 |
< |
int i; |
| 500 |
> |
int a; |
| 501 |
|
|
| 502 |
< |
for (i = 1; i < argc && argv[i][0] == '-'; i++) |
| 503 |
< |
switch (argv[i][1]) { |
| 502 |
> |
for (a = 1; a < argc && argv[a][0] == '-'; a++) |
| 503 |
> |
switch (argv[a][1]) { |
| 504 |
|
case 'i': /* input */ |
| 505 |
< |
if (argv[i][2] == 'c') /* columns */ |
| 506 |
< |
ni_columns = atoi(argv[++i]); |
| 507 |
< |
else if (argv[i][2] == 'r') |
| 508 |
< |
ni_rows = atoi(argv[++i]); |
| 505 |
> |
if (argv[a][2] == 'c') /* columns */ |
| 506 |
> |
ni_columns = atoi(argv[++a]); |
| 507 |
> |
else if (argv[a][2] == 'r') |
| 508 |
> |
ni_rows = atoi(argv[++a]); |
| 509 |
|
else |
| 510 |
|
goto userr; |
| 511 |
|
break; |
| 512 |
|
case 'o': /* output */ |
| 513 |
< |
if (argv[i][2] == 'c') /* columns */ |
| 514 |
< |
no_columns = atoi(argv[++i]); |
| 515 |
< |
else if (argv[i][2] == 'r') |
| 516 |
< |
no_rows = atoi(argv[++i]); |
| 513 |
> |
if (argv[a][2] == 'c') /* columns */ |
| 514 |
> |
no_columns = atoi(argv[++a]); |
| 515 |
> |
else if (argv[a][2] == 'r') |
| 516 |
> |
no_rows = atoi(argv[++a]); |
| 517 |
|
else |
| 518 |
|
goto userr; |
| 519 |
|
break; |
| 520 |
|
case 'h': /* turn off header */ |
| 521 |
< |
switch (argv[i][2]) { |
| 521 |
> |
switch (argv[a][2]) { |
| 522 |
|
case 'i': |
| 523 |
|
i_header = 0; |
| 524 |
|
break; |
| 536 |
|
transpose = !transpose; |
| 537 |
|
break; |
| 538 |
|
case 'f': /* format */ |
| 539 |
< |
switch (argv[i][2]) { |
| 539 |
> |
switch (argv[a][2]) { |
| 540 |
|
case 'a': /* ASCII */ |
| 541 |
|
case 'A': |
| 542 |
|
fmtid = "ascii"; |
| 560 |
|
default: |
| 561 |
|
goto userr; |
| 562 |
|
} |
| 563 |
< |
if (argv[i][3]) { |
| 564 |
< |
if (!isdigit(argv[i][3])) |
| 563 |
> |
if (argv[a][3]) { |
| 564 |
> |
if (!isdigit(argv[a][3])) |
| 565 |
|
goto userr; |
| 566 |
< |
n_comp = atoi(argv[i]+3); |
| 567 |
< |
} |
| 566 |
> |
n_comp = atoi(argv[a]+3); |
| 567 |
> |
} else |
| 568 |
> |
n_comp = 1; |
| 569 |
|
break; |
| 570 |
|
case 'w': /* warnings on/off */ |
| 571 |
|
warnings = !warnings; |
| 573 |
|
default: |
| 574 |
|
goto userr; |
| 575 |
|
} |
| 576 |
< |
if (i < argc-1) /* arg count OK? */ |
| 576 |
> |
if (a < argc-1) /* arg count OK? */ |
| 577 |
|
goto userr; |
| 578 |
|
/* open input file? */ |
| 579 |
< |
if (i == argc-1 && freopen(argv[i], "r", stdin) == NULL) { |
| 580 |
< |
fprintf(stderr, "%s: cannot open for reading\n", argv[i]); |
| 579 |
> |
if (a == argc-1 && freopen(argv[a], "r", stdin) == NULL) { |
| 580 |
> |
fprintf(stderr, "%s: cannot open for reading\n", argv[a]); |
| 581 |
|
return(1); |
| 582 |
|
} |
| 583 |
|
if (comp_size) { |
| 585 |
|
SET_FILE_BINARY(stdout); |
| 586 |
|
} |
| 587 |
|
/* check for no-op */ |
| 588 |
< |
if (!transpose & (i_header == o_header) && (comp_size || |
| 589 |
< |
(no_columns == ni_columns) & (no_rows == ni_rows))) { |
| 588 |
> |
if (!transpose & (i_header == o_header) && |
| 589 |
> |
(no_columns == ni_columns) & (no_rows == ni_rows)) { |
| 590 |
|
if (warnings) |
| 591 |
|
fprintf(stderr, "%s: no-op -- copying input verbatim\n", |
| 592 |
|
argv[0]); |
| 595 |
|
return(0); |
| 596 |
|
} |
| 597 |
|
if (i_header) { /* read header */ |
| 598 |
< |
if (getheader(stdin, &headline, NULL) < 0) |
| 598 |
> |
if (getheader(stdin, headline, NULL) < 0) |
| 599 |
|
return(1); |
| 600 |
|
if (!check_sizes()) |
| 601 |
|
return(1); |
| 606 |
|
} else if (!check_sizes()) |
| 607 |
|
return(1); |
| 608 |
|
if (o_header) { /* write header */ |
| 609 |
< |
printargs(argc, argv, stdout); |
| 589 |
< |
if (transpose && (no_rows <= 0) & (no_columns <= 0)) { |
| 590 |
< |
if (ni_rows > 0) no_columns = ni_rows; |
| 591 |
< |
if (ni_columns > 0) no_rows = ni_columns; |
| 592 |
< |
} |
| 609 |
> |
printargs(a, argv, stdout); |
| 610 |
|
if (no_rows > 0) |
| 611 |
|
printf("NROWS=%d\n", no_rows); |
| 612 |
|
if (no_columns > 0) |
| 616 |
|
fputc('\n', stdout); /* finish new header */ |
| 617 |
|
} |
| 618 |
|
if (transpose) { /* transposing rows & columns? */ |
| 619 |
< |
MEMLOAD myMem; /* need to load into memory */ |
| 620 |
< |
if (i == argc-1) { |
| 619 |
> |
MEMLOAD myMem; /* need to map into memory */ |
| 620 |
> |
if (a == argc-1) { |
| 621 |
|
if (load_file(&myMem, stdin) <= 0) { |
| 622 |
|
fprintf(stderr, "%s: error loading file into memory\n", |
| 623 |
< |
argv[i]); |
| 623 |
> |
argv[a]); |
| 624 |
|
return(1); |
| 625 |
|
} |
| 626 |
|
} else if (load_stream(&myMem, stdin) <= 0) { |
| 630 |
|
} |
| 631 |
|
if (!do_transpose(&myMem)) |
| 632 |
|
return(1); |
| 633 |
< |
/* free_load(&myMem); */ |
| 634 |
< |
} else if (!do_resize(stdin)) /* just reshaping input */ |
| 633 |
> |
/* free_load(&myMem); about to exit, so don't bother */ |
| 634 |
> |
} else if (!do_resize(stdin)) /* reshaping input */ |
| 635 |
|
return(1); |
| 636 |
|
return(0); |
| 637 |
|
userr: |