1 |
greg |
2.1 |
#ifndef lint |
2 |
greg |
2.27 |
static const char RCSid[] = "$Id: rcollate.c,v 2.26 2018/08/02 18:33:50 greg Exp $"; |
3 |
greg |
2.1 |
#endif |
4 |
|
|
/* |
5 |
|
|
* Utility to re-order records in a binary or ASCII data file (matrix) |
6 |
|
|
*/ |
7 |
|
|
|
8 |
|
|
#include <stdlib.h> |
9 |
|
|
#include <string.h> |
10 |
|
|
#include <ctype.h> |
11 |
|
|
#include "platform.h" |
12 |
|
|
#include "rtio.h" |
13 |
|
|
#include "resolu.h" |
14 |
schorsch |
2.23 |
#if defined(_WIN32) || defined(_WIN64) |
15 |
|
|
#undef ftello |
16 |
|
|
#define ftello ftell |
17 |
|
|
#undef ssize_t |
18 |
|
|
#define ssize_t size_t |
19 |
greg |
2.7 |
#else |
20 |
schorsch |
2.23 |
#include <sys/mman.h> |
21 |
greg |
2.1 |
#endif |
22 |
|
|
|
23 |
|
|
typedef struct { |
24 |
|
|
void *base; /* pointer to base memory */ |
25 |
|
|
size_t len; /* allocated memory length */ |
26 |
|
|
int mapped; /* memory-mapped file? */ |
27 |
|
|
} MEMLOAD; /* file loaded/mapped into memory */ |
28 |
|
|
|
29 |
|
|
typedef struct { |
30 |
|
|
int nw_rec; /* number of words per record */ |
31 |
|
|
int nrecs; /* number of records we found */ |
32 |
|
|
char *rec[1]; /* record array (extends struct) */ |
33 |
|
|
} RECINDEX; |
34 |
|
|
|
35 |
greg |
2.4 |
int warnings = 1; /* report warnings? */ |
36 |
|
|
|
37 |
greg |
2.1 |
/* free loaded file */ |
38 |
|
|
static void |
39 |
|
|
free_load(MEMLOAD *mp) |
40 |
|
|
{ |
41 |
|
|
if (mp == NULL || (mp->base == NULL) | (mp->len <= 0)) |
42 |
|
|
return; |
43 |
|
|
#ifdef MAP_FILE |
44 |
|
|
if (mp->mapped) |
45 |
|
|
munmap(mp->base, mp->len); |
46 |
|
|
else |
47 |
|
|
#endif |
48 |
|
|
free(mp->base); |
49 |
|
|
mp->base = NULL; |
50 |
|
|
mp->len = 0; |
51 |
|
|
} |
52 |
|
|
|
53 |
greg |
2.20 |
/* load memory from an input stream, starting from current position */ |
54 |
|
|
static int |
55 |
|
|
load_stream(MEMLOAD *mp, FILE *fp) |
56 |
|
|
{ |
57 |
|
|
size_t alloced = 0; |
58 |
|
|
char buf[8192]; |
59 |
|
|
size_t nr; |
60 |
|
|
|
61 |
|
|
if (mp == NULL) |
62 |
|
|
return(-1); |
63 |
|
|
mp->base = NULL; |
64 |
|
|
mp->len = 0; |
65 |
|
|
mp->mapped = 0; |
66 |
|
|
if (fp == NULL) |
67 |
|
|
return(-1); |
68 |
|
|
while ((nr = fread(buf, 1, sizeof(buf), fp)) > 0) { |
69 |
|
|
if (!alloced) |
70 |
greg |
2.21 |
mp->base = malloc(alloced = nr); |
71 |
greg |
2.20 |
else if (mp->len+nr > alloced) |
72 |
|
|
mp->base = realloc(mp->base, |
73 |
|
|
alloced = alloced*(2+(nr==sizeof(buf)))/2+nr); |
74 |
|
|
if (mp->base == NULL) |
75 |
|
|
return(-1); |
76 |
|
|
memcpy((char *)mp->base + mp->len, buf, nr); |
77 |
|
|
mp->len += nr; |
78 |
|
|
} |
79 |
|
|
if (ferror(fp)) { |
80 |
|
|
free_load(mp); |
81 |
|
|
return(-1); |
82 |
|
|
} |
83 |
|
|
if (alloced > mp->len*5/4) /* don't waste too much space */ |
84 |
|
|
mp->base = realloc(mp->base, mp->len); |
85 |
|
|
return(mp->len > 0); |
86 |
|
|
} |
87 |
|
|
|
88 |
greg |
2.1 |
/* load a file into memory */ |
89 |
|
|
static int |
90 |
|
|
load_file(MEMLOAD *mp, FILE *fp) |
91 |
|
|
{ |
92 |
|
|
int fd; |
93 |
greg |
2.27 |
off_t skip, flen, skipped; |
94 |
greg |
2.1 |
|
95 |
schorsch |
2.23 |
#if defined(_WIN32) || defined(_WIN64) |
96 |
|
|
/* too difficult to fix this */ |
97 |
greg |
2.20 |
return load_stream(mp, fp); |
98 |
|
|
#endif |
99 |
greg |
2.1 |
if (mp == NULL) |
100 |
|
|
return(-1); |
101 |
|
|
mp->base = NULL; |
102 |
|
|
mp->len = 0; |
103 |
|
|
mp->mapped = 0; |
104 |
|
|
if (fp == NULL) |
105 |
|
|
return(-1); |
106 |
|
|
fd = fileno(fp); |
107 |
|
|
skip = ftello(fp); |
108 |
|
|
flen = lseek(fd, 0, SEEK_END); |
109 |
|
|
if (flen <= skip) |
110 |
|
|
return((int)(flen - skip)); |
111 |
|
|
mp->len = (size_t)(flen - skip); |
112 |
|
|
#ifdef MAP_FILE |
113 |
|
|
if (mp->len > 1L<<20) { /* map file if > 1 MByte */ |
114 |
greg |
2.27 |
mp->base = mmap(NULL, flen, PROT_READ, MAP_PRIVATE, fd, 0); |
115 |
greg |
2.1 |
if (mp->base != MAP_FAILED) { |
116 |
greg |
2.27 |
mp->base = (char *)mp->base + skip; |
117 |
greg |
2.1 |
mp->mapped = 1; |
118 |
|
|
return(1); /* mmap() success */ |
119 |
|
|
} |
120 |
|
|
mp->base = NULL; /* fall back to reading it in... */ |
121 |
|
|
} |
122 |
|
|
#endif |
123 |
|
|
if (lseek(fd, skip, SEEK_SET) != skip || |
124 |
|
|
(mp->base = malloc(mp->len)) == NULL) { |
125 |
|
|
mp->len = 0; |
126 |
|
|
return(-1); |
127 |
|
|
} |
128 |
greg |
2.27 |
skipped = skip; /* read() fails on really big buffers */ |
129 |
|
|
while (skipped < flen) { |
130 |
|
|
ssize_t nread = read(fd, (char *)mp->base+(skipped-skip), |
131 |
|
|
(flen-skipped <= 1L<<30) ? flen-skipped : 1L<<30); |
132 |
|
|
if (nread <= 0) { |
133 |
|
|
free_load(mp); |
134 |
|
|
return(-1); |
135 |
|
|
} |
136 |
|
|
skipped += nread; |
137 |
greg |
2.1 |
} |
138 |
|
|
return(1); |
139 |
|
|
} |
140 |
|
|
|
141 |
|
|
/* free a record index */ |
142 |
|
|
#define free_records(rp) free(rp) |
143 |
|
|
|
144 |
|
|
/* compute record index */ |
145 |
|
|
static RECINDEX * |
146 |
|
|
index_records(const MEMLOAD *mp, int nw_rec) |
147 |
|
|
{ |
148 |
greg |
2.24 |
int nall = 0; |
149 |
greg |
2.1 |
RECINDEX *rp; |
150 |
|
|
char *cp, *mend; |
151 |
|
|
int n; |
152 |
|
|
|
153 |
|
|
if (mp == NULL || (mp->base == NULL) | (mp->len <= 0)) |
154 |
|
|
return(NULL); |
155 |
|
|
if (nw_rec <= 0) |
156 |
|
|
return(NULL); |
157 |
greg |
2.24 |
nall = 1000; |
158 |
|
|
rp = (RECINDEX *)malloc(sizeof(RECINDEX) + nall*sizeof(char *)); |
159 |
greg |
2.1 |
if (rp == NULL) |
160 |
|
|
return(NULL); |
161 |
|
|
rp->nw_rec = nw_rec; |
162 |
|
|
rp->nrecs = 0; |
163 |
|
|
cp = (char *)mp->base; |
164 |
|
|
mend = cp + mp->len; |
165 |
|
|
for ( ; ; ) { /* whitespace-separated words */ |
166 |
|
|
while (cp < mend && !*cp | isspace(*cp)) |
167 |
|
|
++cp; |
168 |
|
|
if (cp >= mend) |
169 |
|
|
break; |
170 |
greg |
2.24 |
if (rp->nrecs >= nall) { |
171 |
|
|
nall += nall>>1; /* get more record space */ |
172 |
|
|
rp = (RECINDEX *)realloc(rp, |
173 |
|
|
sizeof(RECINDEX) + nall*sizeof(char *)); |
174 |
|
|
if (rp == NULL) |
175 |
|
|
return(NULL); |
176 |
|
|
} |
177 |
greg |
2.1 |
rp->rec[rp->nrecs++] = cp; /* point to first non-white */ |
178 |
|
|
n = rp->nw_rec; |
179 |
|
|
while (++cp < mend) /* find end of record */ |
180 |
|
|
if (!*cp | isspace(*cp)) { |
181 |
|
|
if (--n <= 0) |
182 |
|
|
break; /* got requisite # words */ |
183 |
|
|
do { /* else find next word */ |
184 |
|
|
if (*cp == '\n') { |
185 |
|
|
fprintf(stderr, |
186 |
|
|
"Unexpected EOL in record!\n"); |
187 |
|
|
free_records(rp); |
188 |
|
|
return(NULL); |
189 |
|
|
} |
190 |
|
|
if (++cp >= mend) |
191 |
|
|
break; |
192 |
|
|
} while (!*cp | isspace(*cp)); |
193 |
|
|
} |
194 |
|
|
} |
195 |
|
|
rp->rec[rp->nrecs] = mend; /* reallocate to save space */ |
196 |
|
|
rp = (RECINDEX *)realloc(rp, |
197 |
|
|
sizeof(RECINDEX) + rp->nrecs*sizeof(char *)); |
198 |
|
|
return(rp); |
199 |
|
|
} |
200 |
|
|
|
201 |
|
|
/* count number of columns based on first EOL */ |
202 |
|
|
static int |
203 |
|
|
count_columns(const RECINDEX *rp) |
204 |
|
|
{ |
205 |
|
|
char *cp = rp->rec[0]; |
206 |
|
|
char *mend = rp->rec[rp->nrecs]; |
207 |
|
|
int i; |
208 |
|
|
|
209 |
|
|
while (*cp != '\n') |
210 |
|
|
if (++cp >= mend) |
211 |
|
|
return(0); |
212 |
|
|
for (i = 0; i < rp->nrecs; i++) |
213 |
|
|
if (rp->rec[i] >= cp) |
214 |
|
|
break; |
215 |
|
|
return(i); |
216 |
|
|
} |
217 |
|
|
|
218 |
|
|
/* copy nth record from index to stdout */ |
219 |
|
|
static int |
220 |
|
|
print_record(const RECINDEX *rp, int n) |
221 |
|
|
{ |
222 |
|
|
int words2go = rp->nw_rec; |
223 |
|
|
char *scp; |
224 |
|
|
|
225 |
|
|
if ((n < 0) | (n >= rp->nrecs)) |
226 |
|
|
return(0); |
227 |
|
|
scp = rp->rec[n]; |
228 |
|
|
do { |
229 |
|
|
putc(*scp++, stdout); |
230 |
|
|
if (!*scp | isspace(*scp)) { |
231 |
|
|
if (--words2go <= 0) |
232 |
|
|
break; |
233 |
|
|
putc(' ', stdout); /* single space btwn. words */ |
234 |
|
|
do |
235 |
|
|
if (++scp >= rp->rec[n+1]) |
236 |
|
|
break; |
237 |
|
|
while (!*scp | isspace(*scp)); |
238 |
|
|
} |
239 |
|
|
} while (scp < rp->rec[n+1]); |
240 |
|
|
/* caller adds record sep. */ |
241 |
|
|
return(1); |
242 |
|
|
} |
243 |
|
|
|
244 |
|
|
/* copy a stream to stdout */ |
245 |
|
|
static int |
246 |
|
|
output_stream(FILE *fp) |
247 |
|
|
{ |
248 |
|
|
char buf[8192]; |
249 |
|
|
ssize_t n; |
250 |
|
|
|
251 |
|
|
if (fp == NULL) |
252 |
|
|
return(0); |
253 |
greg |
2.13 |
fflush(stdout); |
254 |
|
|
while ((n = fread(buf, 1, sizeof(buf), fp)) > 0) |
255 |
greg |
2.1 |
if (write(fileno(stdout), buf, n) != n) |
256 |
|
|
return(0); |
257 |
greg |
2.13 |
return(!ferror(fp)); |
258 |
greg |
2.1 |
} |
259 |
|
|
|
260 |
|
|
/* get next word from stream, leaving stream on EOL or start of next word */ |
261 |
|
|
static char * |
262 |
|
|
fget_word(char buf[256], FILE *fp) |
263 |
|
|
{ |
264 |
|
|
int c; |
265 |
|
|
char *cp; |
266 |
|
|
/* skip nul's and white space */ |
267 |
|
|
while (!(c = getc(fp)) || isspace(c)) |
268 |
|
|
; |
269 |
|
|
if (c == EOF) |
270 |
|
|
return(NULL); |
271 |
|
|
cp = buf; |
272 |
|
|
do |
273 |
|
|
*cp++ = c; |
274 |
|
|
while ((c = getc(fp)) != EOF && !isspace(c) && cp < buf+255); |
275 |
|
|
*cp = '\0'; |
276 |
|
|
while (isspace(c) & (c != '\n')) |
277 |
|
|
c = getc(fp); |
278 |
|
|
if (c != EOF) |
279 |
|
|
ungetc(c, fp); |
280 |
|
|
return(buf); |
281 |
|
|
} |
282 |
|
|
|
283 |
greg |
2.9 |
char *fmtid = NULL; /* format id */ |
284 |
|
|
int comp_size = 0; /* binary bytes/channel */ |
285 |
|
|
int n_comp = 0; /* components/record */ |
286 |
greg |
2.1 |
int ni_columns = 0; /* number of input columns */ |
287 |
|
|
int ni_rows = 0; /* number of input rows */ |
288 |
|
|
int no_columns = 0; /* number of output columns */ |
289 |
|
|
int no_rows = 0; /* number of output rows */ |
290 |
greg |
2.16 |
int transpose = 0; /* transpose rows & cols? */ |
291 |
|
|
int i_header = 1; /* input header? */ |
292 |
|
|
int o_header = 1; /* output header? */ |
293 |
greg |
2.1 |
|
294 |
greg |
2.9 |
/* check settings and assign defaults */ |
295 |
greg |
2.11 |
static int |
296 |
greg |
2.9 |
check_sizes() |
297 |
|
|
{ |
298 |
|
|
if (fmtid == NULL) { |
299 |
|
|
fmtid = "ascii"; |
300 |
|
|
} else if (!comp_size) { |
301 |
|
|
if (!strcmp(fmtid, "float")) |
302 |
|
|
comp_size = sizeof(float); |
303 |
|
|
else if (!strcmp(fmtid, "double")) |
304 |
|
|
comp_size = sizeof(double); |
305 |
|
|
else if (!strcmp(fmtid, "byte")) |
306 |
|
|
comp_size = 1; |
307 |
greg |
2.14 |
else if (strcmp(fmtid, "ascii")) { |
308 |
greg |
2.11 |
fprintf(stderr, "Unsupported format: %s\n", fmtid); |
309 |
|
|
return(0); |
310 |
|
|
} |
311 |
greg |
2.9 |
} |
312 |
greg |
2.16 |
if (transpose && (no_rows <= 0) & (no_columns <= 0)) { |
313 |
|
|
if (ni_rows > 0) no_columns = ni_rows; |
314 |
|
|
if (ni_columns > 0) no_rows = ni_columns; |
315 |
|
|
} else if ((no_rows <= 0) & (no_columns > 0) && |
316 |
|
|
!((ni_rows*ni_columns) % no_columns)) |
317 |
|
|
no_rows = ni_rows*ni_columns/no_columns; |
318 |
greg |
2.9 |
if (n_comp <= 0) |
319 |
|
|
n_comp = 3; |
320 |
greg |
2.11 |
return(1); |
321 |
greg |
2.9 |
} |
322 |
|
|
|
323 |
greg |
2.1 |
/* output transposed ASCII or binary data from memory */ |
324 |
|
|
static int |
325 |
|
|
do_transpose(const MEMLOAD *mp) |
326 |
|
|
{ |
327 |
|
|
static const char tabEOL[2] = {'\t','\n'}; |
328 |
|
|
RECINDEX *rp = NULL; |
329 |
|
|
long nrecords; |
330 |
|
|
int i, j; |
331 |
greg |
2.5 |
/* propogate sizes */ |
332 |
|
|
if (ni_rows <= 0) |
333 |
|
|
ni_rows = no_columns; |
334 |
|
|
if (ni_columns <= 0) |
335 |
|
|
ni_columns = no_rows; |
336 |
greg |
2.1 |
/* get # records (& index) */ |
337 |
greg |
2.9 |
if (!comp_size) { |
338 |
|
|
if ((rp = index_records(mp, n_comp)) == NULL) |
339 |
greg |
2.1 |
return(0); |
340 |
|
|
if (ni_columns <= 0) |
341 |
|
|
ni_columns = count_columns(rp); |
342 |
|
|
nrecords = rp->nrecs; |
343 |
greg |
2.3 |
} else if ((ni_rows > 0) & (ni_columns > 0)) { |
344 |
greg |
2.1 |
nrecords = ni_rows*ni_columns; |
345 |
greg |
2.9 |
if (nrecords > mp->len/(n_comp*comp_size)) { |
346 |
greg |
2.3 |
fprintf(stderr, |
347 |
|
|
"Input too small for specified size and type\n"); |
348 |
|
|
return(0); |
349 |
|
|
} |
350 |
|
|
} else |
351 |
greg |
2.9 |
nrecords = mp->len/(n_comp*comp_size); |
352 |
greg |
2.1 |
/* check sizes */ |
353 |
|
|
if ((ni_rows <= 0) & (ni_columns > 0)) |
354 |
|
|
ni_rows = nrecords/ni_columns; |
355 |
|
|
if ((ni_columns <= 0) & (ni_rows > 0)) |
356 |
|
|
ni_columns = nrecords/ni_rows; |
357 |
|
|
if (nrecords != ni_rows*ni_columns) |
358 |
|
|
goto badspec; |
359 |
|
|
if (no_columns <= 0) |
360 |
|
|
no_columns = ni_rows; |
361 |
|
|
if (no_rows <= 0) |
362 |
|
|
no_rows = ni_columns; |
363 |
|
|
if ((no_rows != ni_columns) | (no_columns != ni_rows)) |
364 |
|
|
goto badspec; |
365 |
|
|
/* transpose records */ |
366 |
|
|
for (i = 0; i < no_rows; i++) { |
367 |
|
|
for (j = 0; j < no_columns; j++) |
368 |
|
|
if (rp != NULL) { /* ASCII output */ |
369 |
|
|
print_record(rp, j*ni_columns + i); |
370 |
|
|
putc(tabEOL[j >= no_columns-1], stdout); |
371 |
|
|
} else { /* binary output */ |
372 |
greg |
2.25 |
putbinary((char *)mp->base + |
373 |
greg |
2.27 |
(unsigned long)(n_comp*comp_size)*(j*ni_columns + i), |
374 |
greg |
2.25 |
comp_size, n_comp, stdout); |
375 |
greg |
2.1 |
} |
376 |
|
|
if (ferror(stdout)) { |
377 |
|
|
fprintf(stderr, "Error writing to stdout\n"); |
378 |
|
|
return(0); |
379 |
|
|
} |
380 |
|
|
} |
381 |
|
|
if (rp != NULL) |
382 |
|
|
free_records(rp); |
383 |
|
|
return(1); |
384 |
|
|
badspec: |
385 |
|
|
fprintf(stderr, "Bad transpose specification -- check dimension(s)\n"); |
386 |
|
|
return(0); |
387 |
|
|
} |
388 |
|
|
|
389 |
|
|
/* resize ASCII stream input by ignoring EOLs between records */ |
390 |
|
|
static int |
391 |
|
|
do_resize(FILE *fp) |
392 |
|
|
{ |
393 |
|
|
long records2go = ni_rows*ni_columns; |
394 |
|
|
int columns2go = no_columns; |
395 |
|
|
char word[256]; |
396 |
|
|
/* sanity checks */ |
397 |
greg |
2.19 |
if (comp_size || (no_columns == ni_columns) & (no_rows == ni_rows)) |
398 |
|
|
return(output_stream(fp)); /* no-op -- just copy */ |
399 |
greg |
2.1 |
if (no_columns <= 0) { |
400 |
|
|
fprintf(stderr, "Missing -oc specification\n"); |
401 |
|
|
return(0); |
402 |
|
|
} |
403 |
|
|
if ((records2go <= 0) & (no_rows > 0)) |
404 |
|
|
records2go = no_rows*no_columns; |
405 |
|
|
else if (no_rows*no_columns != records2go) { |
406 |
|
|
fprintf(stderr, |
407 |
|
|
"Input and output data sizes disagree (%dx%d != %dx%d)\n", |
408 |
|
|
ni_rows, ni_columns, no_rows, no_columns); |
409 |
|
|
return(0); |
410 |
|
|
} |
411 |
|
|
do { /* reshape records */ |
412 |
|
|
int n; |
413 |
|
|
|
414 |
greg |
2.9 |
for (n = n_comp; n--; ) { |
415 |
greg |
2.1 |
if (fget_word(word, fp) == NULL) { |
416 |
greg |
2.9 |
if (records2go > 0 || n < n_comp-1) |
417 |
greg |
2.1 |
break; |
418 |
|
|
goto done; /* normal EOD */ |
419 |
|
|
} |
420 |
|
|
fputs(word, stdout); |
421 |
|
|
if (n) { /* mid-record? */ |
422 |
|
|
int c = getc(fp); |
423 |
|
|
if ((c == '\n') | (c == EOF)) |
424 |
|
|
break; |
425 |
|
|
ungetc(c, fp); |
426 |
|
|
putc(' ', stdout); |
427 |
|
|
} |
428 |
|
|
} |
429 |
|
|
if (n >= 0) { |
430 |
|
|
fprintf(stderr, "Incomplete record / unexpected EOF\n"); |
431 |
|
|
return(0); |
432 |
|
|
} |
433 |
|
|
if (--columns2go <= 0) { /* time to end output row? */ |
434 |
|
|
putc('\n', stdout); |
435 |
|
|
columns2go = no_columns; |
436 |
|
|
} else /* else separate records */ |
437 |
|
|
putc('\t', stdout); |
438 |
|
|
} while (--records2go); /* expected EOD? */ |
439 |
|
|
done: |
440 |
greg |
2.4 |
if (warnings && columns2go != no_columns) |
441 |
greg |
2.1 |
fprintf(stderr, "Warning -- incomplete final row\n"); |
442 |
greg |
2.4 |
if (warnings && fget_word(word, fp) != NULL) |
443 |
|
|
fprintf(stderr, "Warning -- characters beyond expected EOD\n"); |
444 |
greg |
2.1 |
return(1); |
445 |
|
|
} |
446 |
|
|
|
447 |
|
|
/* process a header line and copy to stdout */ |
448 |
|
|
static int |
449 |
|
|
headline(char *s, void *p) |
450 |
|
|
{ |
451 |
greg |
2.26 |
static char fmt[MAXFMTLEN]; |
452 |
greg |
2.9 |
int n; |
453 |
greg |
2.1 |
|
454 |
|
|
if (formatval(fmt, s)) { |
455 |
greg |
2.9 |
if (fmtid == NULL) { |
456 |
|
|
fmtid = fmt; |
457 |
|
|
return(0); |
458 |
|
|
} |
459 |
greg |
2.1 |
if (!strcmp(fmt, fmtid)) |
460 |
|
|
return(0); |
461 |
|
|
fprintf(stderr, "Input format '%s' != '%s'\n", fmt, fmtid); |
462 |
|
|
return(-1); |
463 |
|
|
} |
464 |
greg |
2.9 |
if (!strncmp(s, "NROWS=", 6)) { |
465 |
|
|
n = atoi(s+6); |
466 |
|
|
if ((ni_rows > 0) & (n != ni_rows)) { |
467 |
|
|
fputs("Incorrect input row count\n", stderr); |
468 |
|
|
return(-1); |
469 |
|
|
} |
470 |
|
|
ni_rows = n; |
471 |
|
|
return(0); |
472 |
|
|
} |
473 |
|
|
if (!strncmp(s, "NCOLS=", 6)) { |
474 |
|
|
n = atoi(s+6); |
475 |
|
|
if ((ni_columns > 0) & (n != ni_columns)) { |
476 |
|
|
fputs("Incorrect input column count\n", stderr); |
477 |
|
|
return(-1); |
478 |
|
|
} |
479 |
|
|
ni_columns = n; |
480 |
|
|
return(0); |
481 |
|
|
} |
482 |
|
|
if (!strncmp(s, "NCOMP=", 6)) { |
483 |
|
|
n = atoi(s+6); |
484 |
|
|
if ((n_comp > 0) & (n != n_comp)) { |
485 |
greg |
2.14 |
fputs("Incorrect number of components\n", stderr); |
486 |
greg |
2.9 |
return(-1); |
487 |
|
|
} |
488 |
|
|
n_comp = n; |
489 |
|
|
return(0); |
490 |
|
|
} |
491 |
greg |
2.16 |
if (o_header) |
492 |
|
|
fputs(s, stdout); /* copy header info. */ |
493 |
greg |
2.1 |
return(0); |
494 |
|
|
} |
495 |
|
|
|
496 |
|
|
/* main routine for converting rows/columns in data file */ |
497 |
|
|
int |
498 |
|
|
main(int argc, char *argv[]) |
499 |
|
|
{ |
500 |
greg |
2.14 |
int a; |
501 |
greg |
2.1 |
|
502 |
greg |
2.14 |
for (a = 1; a < argc && argv[a][0] == '-'; a++) |
503 |
|
|
switch (argv[a][1]) { |
504 |
greg |
2.1 |
case 'i': /* input */ |
505 |
greg |
2.14 |
if (argv[a][2] == 'c') /* columns */ |
506 |
|
|
ni_columns = atoi(argv[++a]); |
507 |
|
|
else if (argv[a][2] == 'r') |
508 |
|
|
ni_rows = atoi(argv[++a]); |
509 |
greg |
2.1 |
else |
510 |
|
|
goto userr; |
511 |
|
|
break; |
512 |
|
|
case 'o': /* output */ |
513 |
greg |
2.14 |
if (argv[a][2] == 'c') /* columns */ |
514 |
|
|
no_columns = atoi(argv[++a]); |
515 |
|
|
else if (argv[a][2] == 'r') |
516 |
|
|
no_rows = atoi(argv[++a]); |
517 |
greg |
2.1 |
else |
518 |
|
|
goto userr; |
519 |
|
|
break; |
520 |
greg |
2.10 |
case 'h': /* turn off header */ |
521 |
greg |
2.14 |
switch (argv[a][2]) { |
522 |
greg |
2.10 |
case 'i': |
523 |
|
|
i_header = 0; |
524 |
|
|
break; |
525 |
|
|
case 'o': |
526 |
|
|
o_header = 0; |
527 |
|
|
break; |
528 |
|
|
case '\0': |
529 |
|
|
i_header = o_header = 0; |
530 |
|
|
break; |
531 |
|
|
default: |
532 |
|
|
goto userr; |
533 |
|
|
} |
534 |
greg |
2.1 |
break; |
535 |
|
|
case 't': /* transpose on/off */ |
536 |
|
|
transpose = !transpose; |
537 |
|
|
break; |
538 |
|
|
case 'f': /* format */ |
539 |
greg |
2.14 |
switch (argv[a][2]) { |
540 |
greg |
2.1 |
case 'a': /* ASCII */ |
541 |
|
|
case 'A': |
542 |
|
|
fmtid = "ascii"; |
543 |
greg |
2.9 |
comp_size = 0; |
544 |
greg |
2.1 |
break; |
545 |
|
|
case 'f': /* float */ |
546 |
|
|
case 'F': |
547 |
|
|
fmtid = "float"; |
548 |
greg |
2.9 |
comp_size = sizeof(float); |
549 |
greg |
2.1 |
break; |
550 |
|
|
case 'd': /* double */ |
551 |
|
|
case 'D': |
552 |
|
|
fmtid = "double"; |
553 |
greg |
2.9 |
comp_size = sizeof(double); |
554 |
greg |
2.1 |
break; |
555 |
|
|
case 'b': /* binary (bytes) */ |
556 |
|
|
case 'B': |
557 |
|
|
fmtid = "byte"; |
558 |
greg |
2.9 |
comp_size = 1; |
559 |
greg |
2.1 |
break; |
560 |
|
|
default: |
561 |
|
|
goto userr; |
562 |
|
|
} |
563 |
greg |
2.14 |
if (argv[a][3]) { |
564 |
|
|
if (!isdigit(argv[a][3])) |
565 |
greg |
2.1 |
goto userr; |
566 |
greg |
2.14 |
n_comp = atoi(argv[a]+3); |
567 |
|
|
} else |
568 |
|
|
n_comp = 1; |
569 |
greg |
2.1 |
break; |
570 |
greg |
2.4 |
case 'w': /* warnings on/off */ |
571 |
|
|
warnings = !warnings; |
572 |
|
|
break; |
573 |
greg |
2.1 |
default: |
574 |
|
|
goto userr; |
575 |
|
|
} |
576 |
greg |
2.14 |
if (a < argc-1) /* arg count OK? */ |
577 |
greg |
2.1 |
goto userr; |
578 |
|
|
/* open input file? */ |
579 |
greg |
2.14 |
if (a == argc-1 && freopen(argv[a], "r", stdin) == NULL) { |
580 |
|
|
fprintf(stderr, "%s: cannot open for reading\n", argv[a]); |
581 |
greg |
2.1 |
return(1); |
582 |
|
|
} |
583 |
greg |
2.9 |
if (comp_size) { |
584 |
greg |
2.1 |
SET_FILE_BINARY(stdin); |
585 |
|
|
SET_FILE_BINARY(stdout); |
586 |
|
|
} |
587 |
|
|
/* check for no-op */ |
588 |
greg |
2.19 |
if (!transpose & (i_header == o_header) && |
589 |
|
|
(no_columns == ni_columns) & (no_rows == ni_rows)) { |
590 |
greg |
2.4 |
if (warnings) |
591 |
|
|
fprintf(stderr, "%s: no-op -- copying input verbatim\n", |
592 |
greg |
2.1 |
argv[0]); |
593 |
|
|
if (!output_stream(stdin)) |
594 |
|
|
return(1); |
595 |
|
|
return(0); |
596 |
|
|
} |
597 |
greg |
2.10 |
if (i_header) { /* read header */ |
598 |
greg |
2.15 |
if (getheader(stdin, headline, NULL) < 0) |
599 |
greg |
2.1 |
return(1); |
600 |
greg |
2.11 |
if (!check_sizes()) |
601 |
|
|
return(1); |
602 |
greg |
2.9 |
if (comp_size) { /* a little late... */ |
603 |
|
|
SET_FILE_BINARY(stdin); |
604 |
|
|
SET_FILE_BINARY(stdout); |
605 |
|
|
} |
606 |
greg |
2.11 |
} else if (!check_sizes()) |
607 |
|
|
return(1); |
608 |
greg |
2.10 |
if (o_header) { /* write header */ |
609 |
greg |
2.14 |
printargs(a, argv, stdout); |
610 |
greg |
2.9 |
if (no_rows > 0) |
611 |
|
|
printf("NROWS=%d\n", no_rows); |
612 |
|
|
if (no_columns > 0) |
613 |
|
|
printf("NCOLS=%d\n", no_columns); |
614 |
|
|
printf("NCOMP=%d\n", n_comp); |
615 |
greg |
2.1 |
fputformat(fmtid, stdout); |
616 |
|
|
fputc('\n', stdout); /* finish new header */ |
617 |
greg |
2.10 |
} |
618 |
greg |
2.1 |
if (transpose) { /* transposing rows & columns? */ |
619 |
greg |
2.19 |
MEMLOAD myMem; /* need to map into memory */ |
620 |
greg |
2.14 |
if (a == argc-1) { |
621 |
greg |
2.1 |
if (load_file(&myMem, stdin) <= 0) { |
622 |
|
|
fprintf(stderr, "%s: error loading file into memory\n", |
623 |
greg |
2.14 |
argv[a]); |
624 |
greg |
2.1 |
return(1); |
625 |
|
|
} |
626 |
|
|
} else if (load_stream(&myMem, stdin) <= 0) { |
627 |
|
|
fprintf(stderr, "%s: error loading stdin into memory\n", |
628 |
|
|
argv[0]); |
629 |
|
|
return(1); |
630 |
|
|
} |
631 |
|
|
if (!do_transpose(&myMem)) |
632 |
|
|
return(1); |
633 |
greg |
2.17 |
/* free_load(&myMem); about to exit, so don't bother */ |
634 |
|
|
} else if (!do_resize(stdin)) /* reshaping input */ |
635 |
greg |
2.1 |
return(1); |
636 |
|
|
return(0); |
637 |
|
|
userr: |
638 |
|
|
fprintf(stderr, |
639 |
greg |
2.10 |
"Usage: %s [-h[io]][-w][-f[afdb][N]][-t][-ic in_col][-ir in_row][-oc out_col][-or out_row] [input.dat]\n", |
640 |
greg |
2.1 |
argv[0]); |
641 |
|
|
return(1); |
642 |
|
|
} |